Describe Display
Making good quality reproductions of ggobi plots
To create high quality reproductions of ggobi plot windows, take a look at the DescribeDisplay plugin and corresponding R package.
The R package is available at http://www.ggobi.org/describe-display/ .
The R package takes the R scripts describing the ggobi plots produced by the plugin and reproduces the plots in R. These can be saved as pdf or some other format for inclusion in papers. Actually most of the figures in the upcoming book on R and ggobi were produced this way.
To create high quality reproductions of ggobi plot windows, take a look at the DescribeDisplay plugin and corresponding R package.
The R package is available at http://www.ggobi.org/describe-display/ .
The R package takes the R scripts describing the ggobi plots produced by the plugin and reproduces the plots in R. These can be saved as pdf or some other format for inclusion in papers. Actually most of the figures in the upcoming book on R and ggobi were produced this way.
2 Comments:
Sample of the R script from ggobi:
display = list(colormap = list(name='Set1 9',
ncolors=9,
type=3,
system='rgb',
backgroundColor = c(0.200,0.200,0.200),
hiddenColor = c(0.500,0.500,0.500),
accentColor = c(1.000,1.000,1.000),
foregroundColors = list(c(0.596,0.306,0.639),c(0.969,0.506,0.749),c(0.894,0.102,0.110),c(0.216,0.494,0.722),c(0.302,0.686,0.290),c(1.000,0.498,0.000),c(0.651,0.337,0.157),c(0.600,0.600,0.600),c(1.000,1.000,0.200),)),
title='Southern oils separated by eicosenoic acid',type='scatterplot',nplots=1,
plots = list(list(type='scatterplot',projection='1D Plot',scale=c(0.700, 0.700),
tformLims=c(xmin=-11.214, xmax=70.214, ymin=0.000, ymax=0.000),
planarLims=c(xmin=-23552.000, xmax=23552.000, ymin=-23569.000, ymax=23426.000),
points = list(index = c(
0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,
100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,
200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269,270,271,272,273,274,275,276,277,278,279,280,281,282,283,284,285,286,287,288,289,290,291,292,293,294,295,296,297,298,299,
300,301,302,303,304,305,306,307,308,309,310,311,312,313,314,315,316,317,318,319,320,321,322,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,338,339,340,341,342,343,344,345,346,347,348,349,350,351,352,353,354,355,356,357,358,359,360,361,362,363,364,365,366,367,368,369,370,371,372,373,374,375,376,377,378,379,380,381,382,383,384,385,386,387,388,389,390,391,392,393,394,395,396,397,398,399,
400,401,402,403,404,405,406,407,408,409,410,411,412,413,414,415,416,417,418,419,420,421,422,423,424,425,426,427,428,429,430,431,432,433,434,435,436,437,438,439,440,441,442,443,444,445,446,447,448,449,450,451,452,453,454,455,456,457,458,459,460,461,462,463,464,465,466,467,468,469,470,471,472,473,474,475,476,477,478,479,480,481,482,483,484,485,486,487,488,489,490,491,492,493,494,495,496,497,498,499,
500,501,502,503,504,505,506,507,508,509,510,511,512,513,514,515,516,517,518,519,520,521,522,523,524,525,526,527,528,529,530,531,532,533,534,535,536,537,538,539,540,541,542,543,544,545,546,547,548,549,550,551,552,553,554,555,556,557,558,559,560,561,562,563,564,565,566,567,568,569,570,571,),
x = c(29,
29,29,35,46,44,29,35,33,30,24,44,33,32,41,29,31,28,30,33,45,40,51,26,38,32,30,18,23,38,41,38,35,21,27,28,28,36,33,36,28,25,37,41,26,32,24,20,31,16,29,23,27,24,28,30,23,26,19,26,25,31,25,16,24,28,18,36,41,25,28,34,29,28,18,23,22,36,34,36,30,19,15,14,19,26,32,24,30,22,28,28,24,17,18,16,14,17,28,12,14,
23,21,19,24,30,24,16,15,15,11,19,21,22,12,27,25,26,14,16,20,14,26,16,16,14,17,16,25,12,15,38,23,10,20,24,17,34,36,29,27,42,27,23,17,13,27,16,22,25,28,23,21,27,30,29,28,28,27,28,16,22,24,26,24,30,16,14,12,25,29,13,16,19,33,20,16,21,24,13,32,22,24,31,26,22,31,25,37,23,17,21,31,21,34,23,21,20,26,19,22,
22,23,20,25,19,25,23,24,23,23,28,23,19,32,23,34,36,31,29,32,27,31,35,36,33,29,26,23,33,25,26,30,25,24,27,25,20,27,27,27,23,26,24,33,31,35,30,24,25,27,23,31,31,30,39,36,35,32,37,43,41,45,43,32,25,37,36,46,36,58,56,42,37,35,40,32,27,40,38,40,43,45,32,32,15,44,47,47,38,42,35,31,28,18,32,19,22,23,27,34,
23,16,31,20,28,23,45,27,18,20,21,27,27,33,27,37,15,29,32,38,28,17,2,3,3,2,1,1,2,3,3,2,1,2,1,3,1,3,3,3,2,2,1,1,2,1,2,2,1,1,3,2,1,2,2,2,2,1,3,2,1,3,2,1,1,1,2,2,2,3,1,2,2,1,3,2,3,2,2,1,2,3,1,2,2,2,3,1,2,2,3,1,3,3,3,3,3,1,2,2,
3,2,1,1,2,2,3,2,2,2,1,1,2,2,2,1,1,2,1,2,1,1,2,1,2,2,2,1,3,2,2,1,1,3,3,2,2,1,2,1,3,3,2,1,1,2,3,3,2,1,1,2,3,2,3,3,2,2,2,3,2,3,2,2,1,1,2,2,2,2,3,2,1,2,2,1,3,1,2,2,2,2,1,1,1,2,1,1,1,2,2,1,2,3,3,3,2,2,1,1,
2,2,1,2,1,1,2,2,1,3,1,2,3,3,3,2,3,2,2,3,3,2,1,3,3,1,2,1,2,3,2,1,2,2,3,2,2,2,1,1,2,2,3,2,1,3,3,1,2,3,3,3,3,2,3,1,2,2,1,2,2,2,3,2,1,2,2,3,2,2,2,),
y = c(4.37726e-05,
4.37726e-05,4.37726e-05,2.66387e-05,6.67979e-06,8.86509e-06,4.37726e-05,2.66387e-05,3.24013e-05,4.09897e-05,4.53801e-05,8.86509e-06,3.24013e-05,3.5332e-05,1.27529e-05,4.37726e-05,3.82011e-05,4.6194e-05,4.09897e-05,3.24013e-05,7.83455e-06,1.45484e-05,1.37192e-06,4.80148e-05,1.87571e-05,3.5332e-05,4.09897e-05,2.6237e-05,4.23776e-05,1.87571e-05,1.27529e-05,1.87571e-05,2.66387e-05,3.55727e-05,4.76581e-05,4.6194e-05,4.6194e-05,2.39571e-05,3.24013e-05,2.39571e-05,4.6194e-05,4.72987e-05,2.12894e-05,1.27529e-05,4.80148e-05,3.5332e-05,4.53801e-05,3.23552e-05,3.82011e-05,2.14113e-05,4.37726e-05,4.23776e-05,4.76581e-05,4.53801e-05,4.6194e-05,4.09897e-05,4.23776e-05,4.80148e-05,2.91797e-05,4.80148e-05,4.72987e-05,3.82011e-05,4.72987e-05,2.14113e-05,4.53801e-05,4.6194e-05,2.6237e-05,2.39571e-05,1.27529e-05,4.72987e-05,4.6194e-05,2.94332e-05,4.37726e-05,4.6194e-05,2.6237e-05,4.23776e-05,3.89464e-05,2.39571e-05,2.94332e-05,2.39571e-05,4.09897e-05,2.91797e-05,1.89701e-05,1.61229e-05,2.91797e-05,4.80148e-05,3.5332e-05,4.53801e-05,4.09897e-05,3.89464e-05,4.6194e-05,4.6194e-05,4.53801e-05,2.36595e-05,2.6237e-05,2.14113e-05,1.61229e-05,2.36595e-05,4.6194e-05,9.93908e-06,1.61229e-05,
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color = c(2,
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2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,
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glyphtype = c(1,
1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,
2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,
2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,
2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4,4,4,6,6,6,6,6,6,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,6,6,6,6,6,6,6,6,6,6,6,6,6,6,6,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
4,4,4,4,4,4,4,4,6,6,6,6,6,6,6,6,6,6,6,6,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,
5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,),
glyphsize = c(4,
4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,
4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
4,4,4,4,4,4,4,4,2,2,2,2,2,2,2,2,2,2,2,2,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,3,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,
4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,4,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,2,),
hidden = c(0,
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),
params = list(label='eicosenoic',type=1,orientation=0,lines=1),)),
showMissing=1,showPoints=1,showDirectedEdges=0,showUndirectedEdges=0,showArrowheads=0,)
Sample R code to re-create the plot:
d.tmp<-dd_load("/Users/dicook/ggobi-svn/papers/book/chap-class/olive-1da.R")
d.tmp$plots[[1]]$points$cex<-rep(0.8,572)
d.tmp$plots[[1]]$drawlines <- TRUE
plot(d.tmp)
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